A database for publications published by researchers and students at SimulaMet.
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- Journal articles (211)
- Books (7)
- Edited books (1)
- Proceedings, refereed (235)
- Book chapters (6)
- Talks, keynote (17)
- PhD theses (1)
- Proceedings, non-refereed (18)
- Posters (11)
- Technical reports (11)
- Manuals (1)
- Talks, invited (159)
- Talks, contributed (18)
- Public outreach (46)
- Miscellaneous (12)
Book chapters
5G-sikkerhet: Norge mellom stormaktene
In Digitalisering og internasjonal politikk. Universitetsforlaget, 2022.Status: Published
5G-sikkerhet: Norge mellom stormaktene
| Afilliation | Communication Systems |
| Project(s) | The Center for Resilient Networks and Applications |
| Publication Type | Book Chapter |
| Year of Publication | 2022 |
| Book Title | Digitalisering og internasjonal politikk |
| Chapter | 7 |
| Date Published | 01/2022 |
| Publisher | Universitetsforlaget |
| ISBN Number | 9788215052557 |
Journal articles
Artificial intelligence in dry eye disease
The Ocular Surface 23 (2022): 74-86.Status: Published
Artificial intelligence in dry eye disease
Dry eye disease (DED) has a prevalence of between 5 and 50%, depending on the diagnostic criteria used and population under study. However, it remains one of the most underdiagnosed and undertreated conditions in ophthalmology. Many tests used in the diagnosis of DED rely on an experienced observer for image interpretation, which may be considered subjective and result in variation in diagnosis. Since artificial intelligence (AI) systems are capable of advanced problem solving, use of such techniques could lead to more objective diagnosis. Although the term ‘AI’ is commonly used, recent success in its applications to medicine is mainly due to advancements in the sub-field of machine learning, which has been used to automatically classify images and predict medical outcomes. Powerful machine learning techniques have been harnessed to understand nuances in patient data and medical images, aiming for consistent diagnosis and stratification of disease severity. This is the first literature review on the use of AI in DED. We provide a brief introduction to AI, report its current use in DED research and its potential for application in the clinic. Our review found that AI has been employed in a wide range of DED clinical tests and research applications, primarily for interpretation of interferometry, slit-lamp and meibography images. While initial results are promising, much work is still needed on model development, clinical testing and standardisation.
| Afilliation | Machine Learning |
| Project(s) | Department of Holistic Systems |
| Publication Type | Journal Article |
| Year of Publication | 2022 |
| Journal | The Ocular Surface |
| Volume | 23 |
| Pagination | 74 - 86 |
| Date Published | Jan-01-2022 |
| Publisher | Elsevier |
| ISSN | 15420124 |
| Keywords | artificial intelligence, Dry eye disease, Machine learning |
| URL | https://linkinghub.elsevier.com/retrieve/pii/S1542012421001324 |
| DOI | 10.1016/j.jtos.2021.11.004 |
Estimating tukey depth using incremental quantile estimators
Pattern Recognition 122 (2022): 108339.Status: Published
Estimating tukey depth using incremental quantile estimators
| Afilliation | Machine Learning |
| Project(s) | Department of Holistic Systems |
| Publication Type | Journal Article |
| Year of Publication | 2022 |
| Journal | Pattern Recognition |
| Volume | 122 |
| Pagination | 108339 |
| Publisher | {Elsevier |
A new symmetric linearly implicit exponential integrator preserving polynomial invariants or Lyapunov functions for conservative or dissipative systems
Journal of Computational Physics 449 (2022): 110800.Status: Published
A new symmetric linearly implicit exponential integrator preserving polynomial invariants or Lyapunov functions for conservative or dissipative systems
A new symmetric linearly implicit exponential integrator that preserves the polynomial first integrals or the Lyapunov functions for the conservative and dissipative stiff equations, respectively, is proposed in this work. The method is tested by both oscillated ordinary differential equations and partial differential equations, e.g., an averaged system in wind-induced oscillation, the Fermi–Pasta–Ulam systems, and the polynomial pendulum oscillators. The numerical simulations confirm the conservative properties of the proposed method and demonstrate its good behavior in superior running speed when compared with fully implicit schemes for long-time simulations.
| Afilliation | Machine Learning |
| Project(s) | Department of Machine Intelligence |
| Publication Type | Journal Article |
| Year of Publication | 2022 |
| Journal | Journal of Computational Physics |
| Volume | 449 |
| Pagination | 110800 |
| Date Published | Jan-15-2022 |
| Publisher | Journal of Computational Physics |
| ISSN | 00219991 |
| URL | https://arxiv.org/abs/2104.12118 |
| DOI | 10.1016/j.jcp.2021.110800 |
Complexity and Variability Analyses of Motor Activity Distinguish Mood States in Bipolar Disorder
PLOS ONE (2022).Status: Accepted
Complexity and Variability Analyses of Motor Activity Distinguish Mood States in Bipolar Disorder
| Afilliation | Machine Learning |
| Project(s) | Department of Holistic Systems |
| Publication Type | Journal Article |
| Year of Publication | 2022 |
| Journal | PLOS ONE |
| Publisher | PLOS ONE |
Exploring Dynamic Metabolomics Data With Multiway Data Analysis: a Simulation Study
BMC Bioinformatics 23 (2022).Status: Published
Exploring Dynamic Metabolomics Data With Multiway Data Analysis: a Simulation Study
Background: Analysis of dynamic metabolomics data holds the promise to improve our understanding of underlying mechanisms in metabolism. For example, it may detect changes in metabolism due to the onset of a disease. Dynamic or time-resolved metabolomics data can be arranged as a three-way array with entries organized according to a subjects mode, a metabolites mode and a time mode. While such time-evolving multiway data sets are increasingly collected, revealing the underlying mechanisms and their dynamics from such data remains challenging. For such data, one of the complexities is the presence of a superposition of several sources of variation: induced variation (due to experimental conditions or inborn errors), individual variation, and measurement error. Multiway data analysis (also known as tensor factorizations) has been successfully used in data mining to find the underlying patterns in multiway data. In this paper, we study the use of multiway data analysis to reveal the underlying patterns and dynamics in time-resolved metabolomics data.
Results: We focus on simulated data arising from different dynamic models of increasing complexity, i.e., a simple linear system, a yeast glycolysis model, and a human cholesterol model. We generate data with induced variation as well as individual variation. Systematic experiments are performed to demonstrate the advantages and limitations of multiway data analysis in analyzing such dynamic metabolomics data and their capacity to disentangle the different sources of variations. We choose to use simulations since we want to understand the capability of multiway data analysis methods which is facilitated by knowing the ground truth.
Conclusion: Our numerical experiments demonstrate that despite the increasing complexity of the studied dynamic metabolic models, tensor factorization methods CANDECOMP/PARAFAC(CP) and Parallel Profiles with Linear Dependences (Paralind) can disentangle the sources of variations and thereby reveal the underlying mechanisms and their dynamics.
| Afilliation | Machine Learning |
| Project(s) | Department of Machine Intelligence, TrACEr: Time-Aware ConstrainEd Multimodal Data Fusion |
| Publication Type | Journal Article |
| Year of Publication | 2022 |
| Journal | BMC Bioinformatics |
| Volume | 23 |
| Number | Article 31 |
| Date Published | 2022 |
| Publisher | Springer |
| DOI | 10.1186/s12859-021-04550-5 |
Proceedings, refereed
Measurement of software development effort estimation bias: Avoiding biased measures of estimation bias
In 11th International Conference on Software Engineering and Applications (SEA 2022), 2022.Status: Accepted
Measurement of software development effort estimation bias: Avoiding biased measures of estimation bias
In this paper, we propose improvements in how estimation bias, e.g., the tendency towards under-estimating the effort, is measured. The proposed approach emphasizes the need to know what the estimates are meant to represent, i.e., the type of estimate we evaluate and the need for a match between the type of estimate given and the bias measure used. We show that even perfect estimates of the mean effort will not lead to an expectation of zero estimation bias when applying the frequently used bias measure: (actual effort – estimated effort)/actual effort. This measure will instead reward under-estimates of the mean effort. We also provide examples of bias measures that match estimates of the mean and the median effort, and argue that there are, in general, no practical bias measures for estimates of the most likely effort. The paper concludes with implications for the evaluation of bias of software development effort estimates.
| Afilliation | Software Engineering |
| Project(s) | Department of IT Management |
| Publication Type | Proceedings, refereed |
| Year of Publication | 2022 |
| Conference Name | 11th International Conference on Software Engineering and Applications (SEA 2022) |
Investigative Interviews using a Multimodal Virtual Avatar
In American Psychology-Law Society Conference 2022. Denver USA,: American Psychology-Law Society, 2022.Status: Accepted
Investigative Interviews using a Multimodal Virtual Avatar
To meet best-practice standards, we are developing an interactive virtual avatar aiming as a training tool to raise interviewing skills of child-welfare and law-enforcement professionals. Therefore, we present the “Ilma” avatar that recognizes interviewers’ behavior during open-ended, closed and leading questions, and which can automatically respond to the conversation. We conducted a user study in which master students (N=3) and child protective workers (N=8) interviewed “Ilma” and rated their perception of the interaction. The results show that the participants valued the interaction and found the avatar useful. Thus, it has great potential to be an effective training tool.
| Afilliation | Machine Learning |
| Project(s) | Department of Holistic Systems |
| Publication Type | Proceedings, refereed |
| Year of Publication | 2022 |
| Conference Name | American Psychology-Law Society Conference 2022 |
| Publisher | American Psychology-Law Society |
| Place Published | Denver USA, |
Multimedia Streaming Analytics: Quo Vadis?
In ACM Mile High Video. ACM, 2022.Status: Accepted
Multimedia Streaming Analytics: Quo Vadis?
| Afilliation | Machine Learning |
| Project(s) | Department of Holistic Systems |
| Publication Type | Proceedings, refereed |
| Year of Publication | 2022 |
| Conference Name | ACM Mile High Video |
| Publisher | ACM |
Unsupervised Image Segmentation via Self-Supervised Learning Image Classification
In MediaEval 2021. Working Notes Proceedings of the MediaEval 2021 Workshop ed. CEUR Workshop Proceedings, 2022.Status: Accepted
Unsupervised Image Segmentation via Self-Supervised Learning Image Classification
This paper presents the submission of team Medical-XAI for the Medico: Transparency in Medical Image Segmentation task held at MediaEval 2021. We propose an unsupervised method that utilizes tools from the field of explainable artificial intelligence to create segmentation masks. We extract heat maps, which are useful in order to explain how the `black box' model predicts the category of a certain image, and the segmentation masks are directly derived from the heat maps. Our results show that the created masks can capture the relevant findings to a certain extent using only a small amount of image-level labeled data for the classification model and no segmentation masks at all for the training. This is promising for addressing different challenges within the intersection of artificial intelligence for medicine such as availability of data, cost of labeling and interpretable and explainable results.
| Afilliation | Machine Learning |
| Project(s) | Department of Holistic Systems |
| Publication Type | Proceedings, refereed |
| Year of Publication | 2022 |
| Conference Name | MediaEval 2021 |
| Edition | Working Notes Proceedings of the MediaEval 2021 Workshop |
| Publisher | CEUR Workshop Proceedings |
| Keywords | clustering, Explainable artificial intelligence, Global Features, Grad-CAM, Image segmentation, Medical imaging, Polyp Detection, Self-supervised learning |
| URL | https://2021.multimediaeval.com/paper12.pdf |