A database for publications published by researchers and students at SimulaMet.
Research area
Posters
A Framework for Interaction-based Propagation Analysis in Online Social Networks
Complex Networks, 2020.Status: Published
A Framework for Interaction-based Propagation Analysis in Online Social Networks
Afilliation | Scientific Computing |
Project(s) | Department of High Performance Computing , Department of Holistic Systems, UMOD: Understanding and Monitoring Digital Wildfires |
Publication Type | Poster |
Year of Publication | 2020 |
Place Published | Complex Networks |
Proceedings, refereed
Analysis of Optical Brain Signals Using Connectivity Graph Networks
In International Cross-Domain Conference for Machine Learning and Knowledge Extraction. Springer, 2020.Status: Published
Analysis of Optical Brain Signals Using Connectivity Graph Networks
Afilliation | Scientific Computing |
Project(s) | Department of Holistic Systems |
Publication Type | Proceedings, refereed |
Year of Publication | 2020 |
Conference Name | International Cross-Domain Conference for Machine Learning and Knowledge Extraction |
Pagination | 485–497 |
Publisher | Springer |
FakeNews: Corona Virus and 5G Conspiracy Task at MediaEval 2020
In Media Eval Challange 2020. CEUR, 2020.Status: Published
FakeNews: Corona Virus and 5G Conspiracy Task at MediaEval 2020
Afilliation | Scientific Computing, Machine Learning |
Project(s) | Department of High Performance Computing , Department of Holistic Systems, UMOD: Understanding and Monitoring Digital Wildfires |
Publication Type | Proceedings, refereed |
Year of Publication | 2020 |
Conference Name | Media Eval Challange 2020 |
Publisher | CEUR |
Journal articles
Dyadic Aggregated Autoregressive Model (DASAR) for Automatic Modulation Classification
IEEE Access 8 (2020): 156096-156103.Status: Published
Dyadic Aggregated Autoregressive Model (DASAR) for Automatic Modulation Classification
Afilliation | Scientific Computing |
Project(s) | Department of Holistic Systems |
Publication Type | Journal Article |
Year of Publication | 2020 |
Journal | IEEE Access |
Volume | 8 |
Pagination | 156096–156103 |
Publisher | IEEE |
Journal articles
DeepFake electrocardiograms: the key for open science for artificial intelligence in medicine
Scientific Reports (2021).Status: Accepted
DeepFake electrocardiograms: the key for open science for artificial intelligence in medicine
Recent global developments underscore the prominent role big data have in modern medical science. Privacy issues are a prevalent problem for collecting and sharing data between researchers. Synthetic data generated to represent real data carrying similar information and distribution may alleviate the privacy issue.In this study, we present generative adversarial networks (GANs) capable of generating realistic synthetic DeepFake 12-lead 10-sec electrocardiograms (ECGs). We have developed and compare two methods, WaveGAN* and Pulse2Pulse GAN. We trained the GANs with 7,233 real normal ECG to produce 121,977 DeepFake normal ECGs. By verifying the ECGs using a commercial ECG interpretation program (MUSE 12SL, GE Healthcare), we demonstrate that the Pulse2Pulse GAN was superior to the WaveGAN to produce realistic ECGs. ECG intervals and amplitudes were similar between the DeepFake and real ECGs. These synthetic ECGs are fully anonymous and cannot be referred to any individual, hence they may be used freely. The synthetic dataset will be available as open access for researchers at OSF.io and the DeepFake generator available at the Python Package Index (PyPI) for generating synthetic ECGs.In conclusion, we were able to generate realistic synthetic ECGs using adversarial neural networks on normal ECGs from two population studies, i.e., there by addressing the relevant privacy issues in medical datasets.Competing Interest StatementThe authors have declared no competing interest.Clinical TrialN/AFunding StatementThis work is funded in part by Novo Nordisk Foundation project number NNF18CC0034900.Author DeclarationsI confirm all relevant ethical guidelines have been followed, and any necessary IRB and/or ethics committee approvals have been obtained.YesThe details of the IRB/oversight body that provided approval or exemption for the research described are given below:We confirm that all experiments were performed in accordance with Helsinki guidelines and regulations of the Danish Regional Committees for Medical and Health Research Ethics. The data studies were approved by the ethical committee of Region Zealand (SJ-113, SJ-114, SJ-191), ethical committee of Copenhagen Amt (KA 98 155).All necessary patient/participant consent has been obtained and the appropriate institutional forms have been archived.YesI understand that all clinical trials and any other prospective interventional studies must be registered with an ICMJE-approved registry, such as ClinicalTrials.gov. I confirm that any such study reported in the manuscript has been registered and the trial registration ID is provided (note: if posting a prospective study registered retrospectively, please provide a statement in the trial ID field explaining why the study was not registered in advance).YesI have followed all appropriate research reporting guidelines and uploaded the relevant EQUATOR Network research reporting checklist(s) and other pertinent material as supplementary files, if applicable.YesThe Normal DeepFake ECGs are available at OSF (https://osf.io/6hved/) with corresponding MUSE 12SL ground truth values freely downloadable and usable for ECG algorithm development. The DeepFake generative model is available at https://pypi.org/project/deepfake-ecg/ to generate only synthetic ECGs. https://osf.io/6hved/ https://pypi.org/project/deepfake-ecg/
Afilliation | Scientific Computing, Machine Learning |
Project(s) | Department of Holistic Systems |
Publication Type | Journal Article |
Year of Publication | 2021 |
Journal | Scientific Reports |
Publisher | Nature Publishing Group |
URL | https://www.medrxiv.org/content/early/2021/05/10/2021.04.27.21256189.1 |
DOI | 10.1101/2021.04.27.21256189 |
Nationwide rollout reveals efficacy of epidemic control through digital contact tracing
Nature Communications 12 (2021).Status: Published
Nationwide rollout reveals efficacy of epidemic control through digital contact tracing
Afilliation | Communication Systems, Scientific Computing, Machine Learning |
Project(s) | The Center for Resilient Networks and Applications, Department of Data Science and Knowledge Discovery , Department of Computational Physiology |
Publication Type | Journal Article |
Year of Publication | 2021 |
Journal | Nature Communications |
Volume | 12 |
Number | 5918 |
Publisher | Springer Nature |
DOI | 10.1038/s41467-021-26144-8 |
Journal articles
Enhancing seismic calving event identification in Svalbard through empirical matched field processing and machine learning
Geophysical Journal International 230, no. 2 (2022): 1305-1317.Status: Published
Enhancing seismic calving event identification in Svalbard through empirical matched field processing and machine learning
Seismic signals generated by iceberg calving can be used to monitor ice loss at tidewater glaciers with high temporal resolution and independent of visibility. We combine the Empirical Matched Field (EMF) method and machine learning using Convolutional Neural Networks (CNNs) for calving event detection at the SPITS seismic array and the single broadband station KBS on the Arctic Archipelago of Svalbard. EMF detection with seismic arrays seeks to identify all signals generated by events in a confined target region similar to single P and/or S phase templates by assessing the beam power obtained using empirical phase delays between the array stations. The false detection rate depends on threshold settings and therefore needs appropriate tuning or, alternatively, post-processing. We combine the EMF detector at the SPITS array, as well as an STA/LTA detector at the KBS station, with a post-detection classification step using CNNs. The CNN classifier uses waveforms of the three-component record at KBS as input. We apply the methodology to detect and classify calving events at tidewater glaciers close to the KBS station in the Kongsfjord region in Northwestern Svalbard. In a previous study, a simpler method was implemented to find these calving events in KBS data, and we use it as the baseline in our attempt to improve the detection and classification performance. The CNN classifier is trained using classes of confirmed calving signals from four different glaciers in the Kongsfjord region, seismic noise examples, and regional tectonic seismic events. Subsequently, we process continuous data of 6 months in 2016. We test different CNN architectures and data augmentations to deal with the limited training data set available. Targeting Kronebreen, one of the most active glaciers in the Kongsfjord region, we show that the best performing models significantly improve the baseline classifier. This result is achieved for both the STA/LTA detection at KBS followed by CNN classification, as well as EMF detection at SPITS combined with a CNN classifier at KBS, despite of SPITS being located at 100 km distance from the target glacier in contrast to KBS at 15 km distance. Our results will further increase confidence in estimates of ice loss at Kronebreen derived from seismic observations which in turn can help to better understand the impact of climate change in Svalbard.
Afilliation | Scientific Computing, Machine Learning |
Project(s) | Department of Holistic Systems |
Publication Type | Journal Article |
Year of Publication | 2022 |
Journal | Geophysical Journal International |
Volume | 230 |
Issue | 2 |
Pagination | 1305–1317 |
Date Published | 09/2022 |
Publisher | Oxford University Press |
ISSN | 0956-540X |
URL | https://academic.oup.com/gji/advance-article/doi/10.1093/gji/ggac117/655... |
DOI | 10.1093/gji/ggac117 |
Posters
EXA - A distributed computation environment
Geilo Wintrerschool 2019, 2019.Status: Published
EXA - A distributed computation environment
Afilliation | Scientific Computing |
Project(s) | Department of High Performance Computing , Department of Holistic Systems |
Publication Type | Poster |
Year of Publication | 2019 |
Place Published | Geilo Wintrerschool 2019 |